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Analyzing Linear Communication Networks using the Ribosome Flow Model

机译:利用核糖体流模型分析线性通信网络

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摘要

The Ribosome Flow Model (RFM) describes the unidirectional movement ofinteracting particles along a one-dimensional chain of sites. As a site becomesfuller, the effective entry rate into this site decreases. The RFM has beenused to model and analyze mRNA translation, a biological process in whichribosomes (the particles) move along the mRNA molecule (the chain), and decodethe genetic information into proteins. Here we propose the RFM as an analytical framework for modeling and analyzinglinear communication networks. In this context, the moving particles aredata-packets, the chain of sites is a one dimensional set of ordered buffers,and the decreasing entry rate to a fuller buffer represents a kind ofdecentralized backpressure flow control. For an RFM with homogeneous linkcapacities, we provide closed-form expressions for important network metricsincluding the throughput and end-to-end delay. We use these results to analyzethe hop length and the transmission probability (in a contention access mode)that minimize the end-to-end delay in a multihop linear network, and provideclosed-form expressions for the optimal parameter values.
机译:核糖体流动模型(RFM)描述了相互作用粒子沿一维位点链的单向运动。随着站点变满,进入该站点的有效进入率会降低。 RFM已用于建模和分析mRNA翻译,这是一个生物过程,其中核糖体(颗粒)沿着mRNA分子(链)移动,并将遗传信息解码为蛋白质。在这里,我们建议将RFM用作分析和建模线性通信网络的分析框架。在这种情况下,运动粒子是数据包,位点链是一维一组有序缓冲区,而进入较满缓冲区的速率降低,代表了一种分散的背压流量控制。对于具有同质链接容量的RFM,我们为重要的网络指标(包括吞吐量和端到端延迟)提供了封闭形式的表达式。我们使用这些结果来分析跳跃长度和传输概率(在竞争访问模式下),以最小化多跳线性网络中的端到端延迟,并提供最佳参数值的闭式表达式。

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